Browsing by Author "Kravchenko, Alexandra"

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    Emergent properties of microbial activity in heterogeneous soil microenvironments: different research approaches are slowly converging, yet major challenges remain
    (Frontiers Media, 2018-08-27) Baveye, Philippe C.; Otten, Wilfred; Kravchenko, Alexandra; Balseiro-Romero, María; Beckers, Éléonore; Chalhoub, Maha; Darnault, Christophe; Eickhorst, Thilo; Garnier, Patricia; Hapca, Simona; Kiranyaz, Serkan; Monga, Olivier; Mueller, Carsten W.; Nunan, Naoise; Pot, Valérie; Schlüter, Steffen; Schmidt, Hannes; Vogel, Hans-Jörg
    Over the last 60 years, soil microbiologists have accumulated a wealth of experimental data showing that the bulk, macroscopic parameters (e.g., granulometry, pH, soil organic matter, and biomass contents) commonly used to characterize soils provide insufficient information to describe quantitatively the activity of soil microorganisms and some of its outcomes, like the emission of greenhouse gasses. Clearly, new, more appropriate macroscopic parameters are needed, which reflect better the spatial heterogeneity of soils at the microscale (i.e., the pore scale) that is commensurate with the habitat of many microorganisms. For a long time, spectroscopic and microscopic tools were lacking to quantify processes at that scale, but major technological advances over the last 15 years have made suitable equipment available to researchers. In this context, the objective of the present article is to review progress achieved to date in the significant research program that has ensued. This program can be rationalized as a sequence of steps, namely the quantification and modeling of the physical-, (bio)chemical-, and microbiological properties of soils, the integration of these different perspectives into a unified theory, its upscaling to the macroscopic scale, and, eventually, the development of new approaches to measure macroscopic soil characteristics. At this stage, significant progress has been achieved on the physical front, and to a lesser extent on the (bio)chemical one as well, both in terms of experiments and modeling. With regard to the microbial aspects, although a lot of work has been devoted to the modeling of bacterial and fungal activity in soils at the pore scale, the appropriateness of model assumptions cannot be readily assessed because of the scarcity of relevant experimental data. For significant progress to be made, it is crucial to make sure that research on the microbial components of soil systems does not keep lagging behind the work on the physical and (bio)chemical characteristics. Concerning the subsequent steps in the program, very little integration of the various disciplinary perspectives has occurred so far, and, as a result, researchers have not yet been able to tackle the scaling up to the macroscopic level. Many challenges, some of them daunting, remain on the path ahead. Fortunately, a number of these challenges may be resolved by brand new measuring equipment that will become commercially available in the very near future.
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    A holistic perspective on soil architecture is needed as a key to soil functions
    (Wiley, 2021-07-26) Vogel, Hans-Jörg; Balseiro-Romero, María; Kravchenko, Alexandra; Otten, Wilfred; Pot, Valérie; Schlüter, Steffen; Weller, Ulrich; Baveye, Philippe C.
    Soil functions, including climate regulation and the cycling of water and nutrients, are of central importance for a number of environmental issues of great societal concern. To understand and manage these functions, it is crucial to be able to quantify the structure of soils, now increasingly referred to as their “architecture”, as it constraints the physical, chemical, and biological processes in soils. This quantification was traditionally approached from two different angles, one focussed on aggregates of the solid phase, and the other on the pore space. The recent development of sophisticated, non-disturbing imaging techniques has led to significant progress in the description of soil architecture, in terms of both the pore space and the spatial configuration of mineral and organic materials. We now have direct access to virtually all aspects of soil architecture. In the present article, we review how this affects the perception of soil architecture specifically when trying to describe the functions of soils. A key conclusion of our analysis is that soil architecture, in that context, imperatively needs to be explored in its natural state, with as little disturbance as possible. The same requirement applies to the key processes taking place in the hierarchical soil pore network, including those contributing to the emergence of a heterogeneous organo-mineral soil matrix by various mixing processes such as bioturbation, diffusion, microbial metabolism and organo-mineral interactions. Artificially isolated aggregates are fundamentally inappropriate to derive conclusions about the functioning of an intact soil. To fully account for soil functions, we argue that a holistic approach that centres on the pore space is mandatory while the dismantlement of soils into chunks may still be carried out to study the binding of soil solid components. In the future, significant progress is expected along this holistic direction, as new, advanced technologies become available.
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    Lessons from a landmark 1991 article on soil structure: distinct precedence of non-destructive assessment and benefits of fresh perspectives in soil research
    (CSIRO Publishing, 2022-01-19) Baveye, Philippe C.; Balseiro-Romero, María; Bottinelli, Nicolas; Briones, María; Capowiez, Yvan; Garnier, Patricia; Kravchenko, Alexandra; Otten, Wilfred; Pot, Valérie; Schlüter, Steffen; Vogel, Hans-Jörg
    In 1991, at the launch of a national symposium devoted to soil structure, the Australian Society of Soil Science invited Professor John Letey to deliver a keynote address, which was later published in the society’s journal. In his lecture, he shared the outcome of his reflexion about what the assessment of soil structure should amount to, in order to produce useful insight into the functioning of soils. His viewpoint was that the focus should be put on the openings present in the structure, rather than on the chunks of material resulting from its mechanical dismantlement. In the present article, we provide some historical background for Letey’s analysis, and try to explain why it took a number of years for the paradigm shift that he advocated to begin to occur. Over the last decade, his perspective that soil structure needs to be characterised via non-destructive methods appears to have gained significant momentum, which is likely to increase further in the near future, as we take advantage of recent technological advances. Other valuable lessons that one can derive from Letey’s pioneering article relate to the extreme value for everyone, even neophytes, to constantly ask questions about where research on given topics is heading, what its goals are, and whether the methods that are used at a certain time are optimal.
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    Soil aggregates as biogeochemical reactors: Not a way forward in the research on soil‐atmosphere exchange of greenhouse gases
    (Wiley, 2019-04-08) Kravchenko, Alexandra; Otten, Wilfred; Garnier, Patricia; Pot, Valérie; Baveye, Philippe C.
    Over the last two decades, the fact that soils are significant sources of greenhouse gases (GHG), e.g., carbon dioxide (CO2), methane (CH4), nitrous oxide (N2O), and water vapor, has received considerable attention from the scientific community. Many laboratory and field experiments have been carried out to investigate the release of GHG by soils, and a wide range of computer modeling approaches have been explored to encapsulate what is known about the process, as well as to improve its prediction at various spatial and temporal scales.